Name: [Hs04274336_m1] [LOC100505658]
Creator: Thermo Fisher Scientific
Keywords: [LOC100505658] Assay, [uncharacterized LOC100505658] Assay

Assay Details

Gene Symbol: LOC100505658
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_038333.1		1 - 2	182		84
GenBank mRNA	BC041908.1	-	1 - 2	182		84

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Transcript Location	Amplicon Length
GenBankmRNA	BI562064.1	-	1 - 2	187		Chr. 5 - 141558311 - 141563574 [+] on Build GRCh38	84

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	protocadherin gamma subfamily B, 7	PCDHGB7	ME6, PCDH-GAMMA-B7	-45.3kb	Sense	Chr. 5 - 141417647 - 141512981 on NCBI Build GRCh38
Downstream	histone deacetylase 3	HDAC3	HD3, RPD3, RPD3-2	59.0kb	Anti-sense	Chr. 5 - 141620876 - 141636860 on NCBI Build GRCh38

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC0500008897.hg.1
This assay targets the same location as HTA transcript cluster(s) TC05000770.hg.1

Set Membership:

Amplicon length between 71 and 85

Mammalian Gene Collection

Homo sapiens

Probe spans exons

MicroArray Probes:

Affymetrix

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	PSR05010960.hg.1	TC05000770.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR05010960.hg.1	ENST00000502205.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR05010960.hg.1	NR_038333.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR05010961.hg.1	TC05000770.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR05010961.hg.1	ENST00000502205.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR05010961.hg.1	NR_038333.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0500008897.hg.1	ENST00000502205.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0500008897.hg.1	ENST00000502205.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0500008897.hg.1	ENST00000502205.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0500008897.hg.1	NR_038333.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0500008897.hg.1	NR_038333.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0500008897.hg.1	NR_038333.1	Refseq
Affymetrix Human Clariom D Assay	PSR0500162035.hg.1	ENST00000502205.2	Ensembl
Affymetrix Human Clariom D Assay	PSR0500162035.hg.1	NR_038333.1	Refseq
Affymetrix Human Clariom D Assay	PSR0500162035.hg.1	ENST00000502205.2	Ensembl
Affymetrix Human Clariom D Assay	PSR0500162035.hg.1	NR_038333.1	Refseq
Affymetrix Human Clariom D Assay	PSR0500162035.hg.1	TC0500008897.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	TC0500008897.hg.1	ENST00000502205.2	Ensembl
Affymetrix Human Clariom D Assay	TC0500008897.hg.1	ENST00000502205.2	Ensembl
Affymetrix Human Clariom D Assay	TC0500008897.hg.1	ENST00000502205.2	Ensembl
Affymetrix Human Clariom D Assay	TC0500008897.hg.1	NR_038333.1	Refseq
Affymetrix Human Clariom D Assay	TC0500008897.hg.1	NR_038333.1	Refseq
Affymetrix Human Clariom D Assay	TC0500008897.hg.1	NR_038333.1	Refseq
Affymetrix Human Clariom D Assay	PSR0500162036.hg.1	ENST00000502205.2	Ensembl
Affymetrix Human Clariom D Assay	PSR0500162036.hg.1	NR_038333.1	Refseq
Affymetrix Human Clariom D Assay	PSR0500162036.hg.1	ENST00000502205.2	Ensembl
Affymetrix Human Clariom D Assay	PSR0500162036.hg.1	NR_038333.1	Refseq
Affymetrix Human Clariom D Assay	PSR0500162036.hg.1	TC0500008897.hg.1	Clariom D TC

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Genomic Map