Name: [Hs04274480_m1] [LOC100505978]
Creator: Thermo Fisher Scientific
Keywords: [LOC100505978] Assay, [uncharacterized LOC100505978] Assay

Assay Details

Gene Symbol: LOC100505978
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_038912.1		3 - 4	464		72
GenBank mRNA	BC034326.1	-	3 - 4	464		72

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	Transcript Location	Amplicon Length
GenBankmRNA	BG773143.1	-	3 - 4	469	Chr. 12 - 106681124 - 106684700 [-] on Build GRCh38	72
GenBankmRNA	HY002160.1	-	3 - 4	441	Chr. 12 - 106681106 - 106684676 [-] on Build GRCh38	72
GenBankmRNA	BF057785.1	-	1 - 2		Chr. 12 - 106680759 - 106682110 [+] on Build GRCh38	72
GenBankmRNA	HY041516.1	-	2 - 3	200	Chr. 12 - 106680916 - 106684678 [-] on Build GRCh38	72
GenBankmRNA	AI962194.1	-	1 - 2		Chr. 12 - 106680759 - 106682068 [+] on Build GRCh38	72
GenBankmRNA	HY228125.1	-	1 - 2		Chr. 12 - 106680762 - 106682058 [+] on Build GRCh38	72
GenBankmRNA	BQ441495.1	-		217	Chr. - - [-] on Build	72

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	uncharacterized LOC100287944	LOC100287944			Sense	Chr. 12 - 106496410 - 106774831 on NCBI Build GRCh38
Downstream	RIC8 guanine nucleotide exchange factor B	RIC8B	RIC8, hSyn	92.1kb	Anti-sense	Chr. 12 - 106774285 - 106889316 on NCBI Build GRCh38

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC1200011806.hg.1
This assay targets the same location as HTA transcript cluster(s) TC12001921.hg.1

Set Membership:

Amplicon length between 71 and 85

3' Most

Mammalian Gene Collection

Homo sapiens

Probe spans exons

MicroArray Probes:

Agilent Affymetrix ArrayStar

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	PSR12025048.hg.1	ENST00000547531.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR12025048.hg.1	NR_038912.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR12025048.hg.1	TC12001921.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	TC1200011806.hg.1	ENST00000547531.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200011806.hg.1	ENST00000547531.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200011806.hg.1	ENST00000547531.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200011806.hg.1	ENST00000547531.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200011806.hg.1	ENST00000547531.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200011806.hg.1	NR_038912.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1200011806.hg.1	NR_038912.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1200011806.hg.1	NR_038912.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1200011806.hg.1	NR_038912.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1200011806.hg.1	NR_038912.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR12025047.hg.1	ENST00000547531.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR12025047.hg.1	NR_038912.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR12025047.hg.1	TC12001921.hg.1	HTA TC
Affymetrix Human Clariom D Assay	TC1200011806.hg.1	ENST00000547531.1	Ensembl
Affymetrix Human Clariom D Assay	TC1200011806.hg.1	ENST00000547531.1	Ensembl
Affymetrix Human Clariom D Assay	TC1200011806.hg.1	ENST00000547531.1	Ensembl
Affymetrix Human Clariom D Assay	TC1200011806.hg.1	ENST00000547531.1	Ensembl
Affymetrix Human Clariom D Assay	TC1200011806.hg.1	ENST00000547531.1	Ensembl
Affymetrix Human Clariom D Assay	TC1200011806.hg.1	NR_038912.1	Refseq
Affymetrix Human Clariom D Assay	TC1200011806.hg.1	NR_038912.1	Refseq
Affymetrix Human Clariom D Assay	TC1200011806.hg.1	NR_038912.1	Refseq
Affymetrix Human Clariom D Assay	TC1200011806.hg.1	NR_038912.1	Refseq
Affymetrix Human Clariom D Assay	TC1200011806.hg.1	NR_038912.1	Refseq
Affymetrix Human Clariom D Assay	PSR1200191478.hg.1	ENST00000547531.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1200191478.hg.1	NR_038912.1	Refseq
Affymetrix Human Clariom D Assay	PSR1200191478.hg.1	ENST00000547531.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1200191478.hg.1	NR_038912.1	Refseq
Affymetrix Human Clariom D Assay	PSR1200191478.hg.1	TC1200011806.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR1200191479.hg.1	ENST00000547531.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1200191479.hg.1	NR_038912.1	Refseq
Affymetrix Human Clariom D Assay	PSR1200191479.hg.1	ENST00000547531.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1200191479.hg.1	NR_038912.1	Refseq
Affymetrix Human Clariom D Assay	PSR1200191479.hg.1	TC1200011806.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR1200191477.hg.1	ENST00000547531.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1200191477.hg.1	NR_038912.1	Refseq
Affymetrix Human Clariom D Assay	PSR1200191477.hg.1	ENST00000547531.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1200191477.hg.1	NR_038912.1	Refseq
Affymetrix Human Clariom D Assay	PSR1200191477.hg.1	TC1200011806.hg.1	Clariom D TC

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Array Name	Probe IDs	Targets	Target Type
Agilent Genotypic Designed Human Whole genome gene expression profiling microarray 4x44k	GT_44k_32_P138950	-	-
Agilent Whole Human Genome Oligo Microarray 4x44K	19574	-	-
Whole Human Genome Oligo Microarray G4112A	A_32_P138950	-	-
Agilent Whole Human Genome Microarray 4x44K G4112F	A_32_P138950	-	-
Agilent Human 1B Microarray G4111A	A_32_P138950	-	-

System Message

Genomic Map