Assay Details

Gene Symbol: MIR3978
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_039774.1		1	47		85

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Transcript Location	Amplicon Length
GenBankmRNA	CN280890.1	-	1			Chr. X - 110082019 - 110082717 [-] on Build GRCh38	85

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	microRNA 652	MIR652	MIRN652, hsa-mir-652	-26.7kb	Sense	Chr. X - 110055329 - 110055426 on NCBI Build GRCh38
Downstream	uncharacterized LOC101928589	LOC101928589		93.6kb	Sense	Chr. X - 110175773 - 110177788 on NCBI Build GRCh38

More Information

Updated Mapping Information

This assay is designed to target a precursor miRNA (pre-miRNA) target. It may not discriminate between the primary transcript (pri-miRNA) and the pre-miRNA for this miRNA. If you are looking for an assay to detect the mature miRNA, please search the MicroRNA collection of assays.
This assay targets the same location as Clariom D transcript cluster(s) TC0X00008113.hg.1
This assay targets the same location as HTA transcript cluster(s) TC0X000540.hg.1

Set Membership:

Amplicon length between 71 and 85

3' Most

Detect Genomic DNA

Homo sapiens

Both primers and probe map within a single exon

MicroArray Probes:

Affymetrix

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	TC0X00008113.hg.1	ENST00000585195.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00008113.hg.1	NR_039774.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR0X007253.hg.1	TC0X000540.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR0X007253.hg.1	NR_039774.1	Refseq
Affymetrix Human Clariom D Assay	PSR0X00155502.hg.1	ENST00000585195.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0X00155502.hg.1	NR_039774.1	Refseq
Affymetrix Human Clariom D Assay	PSR0X00155502.hg.1	ENST00000585195.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0X00155502.hg.1	NR_039774.1	Refseq
Affymetrix Human Clariom D Assay	PSR0X00155502.hg.1	TC0X00008113.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	TC0X00008113.hg.1	ENST00000585195.1	Ensembl
Affymetrix Human Clariom D Assay	TC0X00008113.hg.1	NR_039774.1	Refseq

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System Message

Genomic Map