Name: [Hs04331889_m1] [LOC339666]
Creator: Thermo Fisher Scientific
Keywords: [LOC339666] Assay, [uncharacterized LOC339666] Assay

Assay Details

Gene Symbol: LOC339666
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_038918.1		1 - 2	56		62
GenBank mRNA	BC041349.2	-	1 - 2	56		62

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Transcript Location	Amplicon Length
GenBankmRNA	BI461237.1	-	1 - 2	61		Chr. 22 - 32376664 - 32383451 [+] on Build GRCh38	62

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	RFPL3 antisense	RFPL3S	NCRNA00005, RFPL3-AS, RFPL3-AS1, RFPL3ANT, RFPL3AS	-5.4kb	Anti-sense	Chr. 22 - 32359906 - 32371264 on NCBI Build GRCh38
Downstream	RNA 2',3'-cyclic phosphate and 5'-OH ligase	RTCB	C22orf28, DJ149A16.6, FAAP, HSPC117	9.8kb	Anti-sense	Chr. 22 - 32387575 - 32412287 on NCBI Build GRCh38

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC2200007135.hg.1
This assay targets the same location as HTA transcript cluster(s) TC22000244.hg.1

Set Membership:

Amplicon length less than or equal to 70

3' Most

Mammalian Gene Collection

Homo sapiens

Probe spans exons

MicroArray Probes:

Agilent Affymetrix ArrayStar

Array Name	Probe IDs	Targets	Target Type
Agilent Human Whole Genome ChIP Tiling Array	A_17_P32159687	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P32159694	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P11477239	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P32159685	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P32159697	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P32159704	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P11477253	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P11477241	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P32159683	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P32159680	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P11477246	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P32159699	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P11477251	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P32159684	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P11477248	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P32159692	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P11477240	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P32159681	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P32159686	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P11477245	-	-
Agilent Whole Human Genome Microarray 4x44K v2	A_33_P3663277	-	-
Agilent G4851A SurePrint G3 Hmn GE 8x60K Microarray	20670	-	-
Agilent Whole Human Genome Microarray 4x44K v2	A_33_P3663277	-	-
SurePrint G3 Human GE Microarray G4851A	A_33_P3663277	-	-
Agilent Human Genome 244K CGH Microarray (Alpha Test)	A_16_P03617133	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix HT HG-U133+ PM Array Plate	1562841_PM_at	-	-
Affymetrix Human Transcriptome Array 2.0	PSR22004612.hg.1	ENST00000420171.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR22004612.hg.1	NR_038918.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR22004612.hg.1	TC22000244.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR22004611.hg.1	ENST00000420171.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR22004611.hg.1	ENST00000444848.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR22004611.hg.1	NR_038918.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR22004611.hg.1	TC22000244.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR22004608.hg.1	ENST00000420171.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR22004608.hg.1	NR_038918.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR22004608.hg.1	TC22000244.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR22004610.hg.1	ENST00000420171.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR22004610.hg.1	NR_038918.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR22004610.hg.1	TC22000244.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	TC2200007135.hg.1	ENST00000420171.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC2200007135.hg.1	ENST00000420171.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC2200007135.hg.1	ENST00000420171.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC2200007135.hg.1	ENST00000420171.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC2200007135.hg.1	ENST00000420171.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC2200007135.hg.1	ENST00000430579.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC2200007135.hg.1	ENST00000444848.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC2200007135.hg.1	ENST00000444848.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC2200007135.hg.1	NR_038918.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC2200007135.hg.1	NR_038918.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC2200007135.hg.1	NR_038918.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC2200007135.hg.1	NR_038918.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC2200007135.hg.1	NR_038918.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR22004609.hg.1	ENST00000420171.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR22004609.hg.1	NR_038918.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR22004609.hg.1	TC22000244.hg.1	HTA TC
Affymetrix Human Clariom D Assay	PSR2200150267.hg.1	TC2200007135.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR2200150267.hg.1	ENST00000420171.1	Ensembl
Affymetrix Human Clariom D Assay	PSR2200150267.hg.1	NR_038918.1	Refseq
Affymetrix Human Clariom D Assay	PSR2200150267.hg.1	ENST00000420171.1	Ensembl
Affymetrix Human Clariom D Assay	PSR2200150267.hg.1	NR_038918.1	Refseq
Affymetrix Human Clariom D Assay	PSR2200150269.hg.1	TC2200007135.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR2200150269.hg.1	ENST00000420171.1	Ensembl
Affymetrix Human Clariom D Assay	PSR2200150269.hg.1	NR_038918.1	Refseq
Affymetrix Human Clariom D Assay	PSR2200150269.hg.1	ENST00000420171.1	Ensembl
Affymetrix Human Clariom D Assay	PSR2200150269.hg.1	NR_038918.1	Refseq
Affymetrix Human Clariom D Assay	PSR2200150268.hg.1	TC2200007135.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR2200150268.hg.1	ENST00000420171.1	Ensembl
Affymetrix Human Clariom D Assay	PSR2200150268.hg.1	ENST00000444848.1	Ensembl
Affymetrix Human Clariom D Assay	PSR2200150268.hg.1	NR_038918.1	Refseq
Affymetrix Human Clariom D Assay	PSR2200150268.hg.1	ENST00000420171.1	Ensembl
Affymetrix Human Clariom D Assay	PSR2200150268.hg.1	ENST00000444848.1	Ensembl
Affymetrix Human Clariom D Assay	PSR2200150268.hg.1	NR_038918.1	Refseq
Affymetrix Human Clariom D Assay	PSR2200150265.hg.1	TC2200007135.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR2200150265.hg.1	ENST00000420171.1	Ensembl
Affymetrix Human Clariom D Assay	PSR2200150265.hg.1	NR_038918.1	Refseq
Affymetrix Human Clariom D Assay	PSR2200150265.hg.1	ENST00000420171.1	Ensembl
Affymetrix Human Clariom D Assay	PSR2200150265.hg.1	NR_038918.1	Refseq
Affymetrix Human Clariom D Assay	PSR2200150266.hg.1	TC2200007135.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR2200150266.hg.1	ENST00000420171.1	Ensembl
Affymetrix Human Clariom D Assay	PSR2200150266.hg.1	NR_038918.1	Refseq
Affymetrix Human Clariom D Assay	PSR2200150266.hg.1	ENST00000420171.1	Ensembl
Affymetrix Human Clariom D Assay	PSR2200150266.hg.1	NR_038918.1	Refseq
Affymetrix Human Clariom D Assay	TC2200007135.hg.1	ENST00000420171.1	Ensembl
Affymetrix Human Clariom D Assay	TC2200007135.hg.1	ENST00000420171.1	Ensembl
Affymetrix Human Clariom D Assay	TC2200007135.hg.1	ENST00000420171.1	Ensembl
Affymetrix Human Clariom D Assay	TC2200007135.hg.1	ENST00000420171.1	Ensembl
Affymetrix Human Clariom D Assay	TC2200007135.hg.1	ENST00000420171.1	Ensembl
Affymetrix Human Clariom D Assay	TC2200007135.hg.1	ENST00000430579.1	Ensembl
Affymetrix Human Clariom D Assay	TC2200007135.hg.1	ENST00000444848.1	Ensembl
Affymetrix Human Clariom D Assay	TC2200007135.hg.1	ENST00000444848.1	Ensembl
Affymetrix Human Clariom D Assay	TC2200007135.hg.1	NR_038918.1	Refseq
Affymetrix Human Clariom D Assay	TC2200007135.hg.1	NR_038918.1	Refseq
Affymetrix Human Clariom D Assay	TC2200007135.hg.1	NR_038918.1	Refseq
Affymetrix Human Clariom D Assay	TC2200007135.hg.1	NR_038918.1	Refseq
Affymetrix Human Clariom D Assay	TC2200007135.hg.1	NR_038918.1	Refseq
Human Genome U133 Plus 2.0 Array	1562841_at	-	-
Human Genome U133 Plus 2.0 Array	234385_PM_at	-	-
Human Genome U133 Plus 2.0 Array	234385_at	-	-
Human Genome U133 Plus 2.0 Array	1562841_PM_at	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	1562841_at6	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	1562841_at11	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	1562841_at1	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	1562841_at5	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	1562841_at4	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	1562841_at8	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	1562841_at7	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	1562841_at10	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	1562841_at9	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	1562841_at3	-	-
Affymetrix Human Genome U133 Plus 2.0 Array	1562841_at2	-	-

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Catalog #	4426961
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