Name: [Hs04333773_s1] [SCARNA20]
Creator: Thermo Fisher Scientific
Keywords: [SCARNA20] Assay, [small Cajal body-specific RNA 20] Assay

Assay Details

Gene Symbol: SCARNA20
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_002999.2		1	78		107

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	ubiquitin specific peptidase 32	USP32	NY-REN-60, USP10		Sense	Chr. 17 - 60177231 - 60422470 on NCBI Build GRCh38
Downstream	chromosome 17 open reading frame 64	C17orf64		189.4kb	Anti-sense	Chr. 17 - 60421091 - 60431426 on NCBI Build GRCh38

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC1700011314.hg.1
This assay targets the same location as HTA transcript cluster(s) TC17001762.hg.1

Set Membership:

Amplicon length greater than or equal to 101

3' Most

Detect Genomic DNA

Homo sapiens

Both primers and probe map within a single exon

MicroArray Probes:

Agilent Affymetrix ArrayStar Illumina

Array Name	Probe IDs	Targets	Target Type
Agilent Genotypic Designed Human Whole genome gene expression profiling microarray 4x44k	GT_HS_44k_4016	-	-
Agilent Genotypic Designed Human Whole genome gene expression profiling microarray 4x44k	GT_HS_44k_4015	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P30979724	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P10400092	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P30979727	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P30979741	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P10400089	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P10400083	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P30979742	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P30979738	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P30979729	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P30979726	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P10400086	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P30979725	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P30979730	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P30979736	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P30979732	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P10400086	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P30979738	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P30979724	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P30979726	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P30979727	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P30979725	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P30979729	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P30979732	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P30979736	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P30979742	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P30979741	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P30979730	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P10400083	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P10400089	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P10400092	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P10400096	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P10400083	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P10400088	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P10400090	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P10400074	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P10400078	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P10400092	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P10400081	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P10400080	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P10400076	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P10400094	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P10400085	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Genome U219 Array	11757263_x_at	-	-
Affymetrix Human Genome U219 Array	11763957_PM_at	-	-
Affymetrix Human Genome U219 Array	11757262_at	-	-
Affymetrix Human Genome U219 Array	11763957_at	-	-
Affymetrix Human Genome U219 Array	11757263_PM_x_at	-	-
Affymetrix Human Genome U219 Array	11757262_PM_at	-	-
Affymetrix Human Transcriptome Array 2.0	PSR17023539.hg.1	ENST00000516768.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR17023539.hg.1	NR_002999.2	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR17023539.hg.1	TC17001762.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	TC1700011314.hg.1	ENST00000516768.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1700011314.hg.1	NR_002999.2	Refseq
Affymetrix Human Clariom D Assay	PSR1700191228.hg.1	ENST00000516768.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1700191228.hg.1	NR_002999.2	Refseq
Affymetrix Human Clariom D Assay	PSR1700191228.hg.1	ENST00000516768.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1700191228.hg.1	NR_002999.2	Refseq
Affymetrix Human Clariom D Assay	PSR1700191228.hg.1	TC1700011314.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	TC1700011314.hg.1	ENST00000516768.1	Ensembl
Affymetrix Human Clariom D Assay	TC1700011314.hg.1	NR_002999.2	Refseq

Array Name	Probe IDs	Targets	Target Type
HumanHT-12 v4 Expression BeadChip	ILMN_3245471	NR_002999.2	human_transcriptome
HumanHT-12 V4.0 expression beadchip	ILMN_3245471	NR_002999.2	human_transcriptome
Illumina HumanHT-12 WG-DASL V4.0 expression beadchip	ILMN_3245471	NR_002999.2	human_transcriptome
Illumina HumanHT-12 WG-DASL V4.0 R2 expression beadchip	ILMN_3245471	NR_002999.2	human_transcriptome

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