Name: [Hs04407094_s1] [PACERR]
Creator: Thermo Fisher Scientific
Keywords: [PACERR] Assay, [PTGS2 antisense NFKB1 complex-mediated expression regulator RNA] Assay

Assay Details

Gene Symbol: PACERR
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_125801.1		1	615		85

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Transcript Location	Amplicon Length
GenBankmRNA	AV763625.1	-	1	410		Chr. 1 - 186680859 - 186681445 [+] on Build GRCh38	85
GenBankmRNA	AI761807.1	-	1			Chr. 1 - 186680889 - 186681445 [-] on Build GRCh38	85

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	prostaglandin-endoperoxide synthase 2	PTGS2	COX-2, COX2, GRIPGHS, PGG/HS, PGHS-2, PHS-2, hCox-2	-227.0	Anti-sense	Chr. 1 - 186671812 - 186680427 on NCBI Build GRCh38
Downstream	phospholipase A2 group IVA	PLA2G4A	PLA2G4, cPLA2, cPLA2-alpha	147.5kb	Sense	Chr. 1 - 186828900 - 186989896 on NCBI Build GRCh38

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC0100010935.hg.1

Set Membership:

Amplicon length between 71 and 85

3' Most

Detect Genomic DNA

Homo sapiens

Both primers and probe map within a single exon

MicroArray Probes:

Affymetrix

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	TC0100010935.hg.1	ENST00000608917.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100010935.hg.1	ENST00000608917.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100010935.hg.1	NR_125801.1	Refseq
Affymetrix Human Clariom D Assay	PSR0100180439.hg.1	ENST00000608917.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0100180439.hg.1	NR_125801.1	Refseq
Affymetrix Human Clariom D Assay	PSR0100180439.hg.1	ENST00000608917.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0100180439.hg.1	NR_125801.1	Refseq
Affymetrix Human Clariom D Assay	PSR0100180439.hg.1	TC0100010935.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	TC0100010935.hg.1	ENST00000608917.1	Ensembl
Affymetrix Human Clariom D Assay	TC0100010935.hg.1	ENST00000608917.1	Ensembl
Affymetrix Human Clariom D Assay	TC0100010935.hg.1	NR_125801.1	Refseq

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System Message

Genomic Map