Name: [Mm04278224_m1] [Gm3143]
Creator: Thermo Fisher Scientific
Keywords: [Gm3143] Assay, [predicted gene 3143] Assay

Assay Details

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	Transcript Location	Amplicon Length
GenBankmRNA	CJ085088.1	-	2 - 3	190	Chr. 3 - 34709914 - 34716676 [-] on Build GRCm38	75
GenBankmRNA	BG070805.2	-	2 - 3		Chr. 3 - 34709732 - 34716633 [+] on Build GRCm38	75
GenBankmRNA	BG083808.2	-	2 - 3	147	Chr. 3 - 34709716 - 34716633 [-] on Build GRCm38	75

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	SOX2 overlapping transcript (non-protein coding)	Sox2ot	B230215L15Rik	-32.2kb	Anti-sense	Chr. 3 - 34560381 - 34677993 on NCBI Build GRCm38
Downstream	predicted gene, 38509	Gm38509	Peril	58.0kb	Anti-sense	Chr. 3 - 34772075 - 34782346 on NCBI Build GRCm38

This assay targets the same location as MTA transcript cluster(s) TC0300001834.mm.1

Amplicon length between 71 and 85

Mus musculus

Probe spans exons

Affymetrix

Array Name	Probe IDs	Targets	Target Type
Affymetrix Mouse Clariom S Array	PSR0300014158.mm.1	NR_038347.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0300014158.mm.1	NR_038347.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0300014158.mm.1	NR_038348.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0300014158.mm.1	NR_038348.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0300014158.mm.1	TC0300001834.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0300014157.mm.1	NR_038348.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0300014157.mm.1	NR_038348.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0300014157.mm.1	TC0300001834.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0300014156.mm.1	NR_038347.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0300014156.mm.1	NR_038347.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0300014156.mm.1	NR_038348.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0300014156.mm.1	NR_038348.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0300014156.mm.1	TC0300001834.mm.1	MTA TC