Rn01435293_m1 Best Coverage

• Gene Symbol: Sptlc1
• Gene Name: serine palmitoyltransferase, long chain base subunit 1
• Gene Aliases: Lcb1, RGD1306617, Spt1
• Chromosome Location: Chr.17: 11856525 - 11895566 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Sptlc1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001108406.1	NP_001101876.1	14 - 15	1334		69

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC1700000208.rn.1

• Set Membership: Amplicon length less than or equal to 70, Recommended Assay, Rattus norvegicus, 1700, Probe spans exons

Panther Classification:

Molecular Function -

transaminase

Gene Ontology Categories:

Process(es)

sphingomyelin biosynthetic process
sphinganine biosynthetic process
sphingosine biosynthetic process
ceramide biosynthetic process

Function(s)

serine C-palmitoyltransferase activity
pyridoxal phosphate binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_42_P734384	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	597011	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	143590	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	884445	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	367495	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	345689	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	507068	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	399313	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	440311	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	567981	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	94962	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	575213	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	332248	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	460367	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	811196	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	774433	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	183283	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	460643	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	762968	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	871135	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	428389	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	360237	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	710919	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	502005	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	3075	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	697651	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	115778	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	88611	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	905808	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	106669	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	170616	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	5838	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	109580	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_42_P734384	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_42_P734384	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_42_P734384	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P440870	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_42_P734384	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P314081	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	104725	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10794216	-	-
Affymetrix Rat Gene 1.0 ST Array	10794219	-	-
Affymetrix Rat Gene 1.0 ST Array	10794212	-	-
Affymetrix Rat Gene 1.0 ST Array	10794217	-	-
Affymetrix Rat Gene 1.0 ST Array	10794209	-	-
Affymetrix Rat Gene 1.0 ST Array	10794214	-	-
Affymetrix Rat Gene 1.0 ST Array	10794207	-	-
Affymetrix Rat Gene 1.0 ST Array	10794211	-	-
Affymetrix Rat Gene 1.0 ST Array	10794220	-	-
Affymetrix Rat Gene 1.0 ST Array	10794210	-	-
Affymetrix Rat Gene 1.0 ST Array	10794208	-	-
Affymetrix Rat Gene 1.0 ST Array	10794215	-	-
Affymetrix Rat Gene 1.0 ST Array	10794218	-	-
Affymetrix Rat Gene 1.0 ST Array	10794221	-	-
Affymetrix Rat Gene 1.0 ST Array	10794213	-	-
Affymetrix Rat Gene 1.1 ST Array	10794206	-	-
Rat Genome 230 2.0 Array	1373203_at	-	-
Rat Genome 230 2.0 Array	1396024_at	-	-
Rat Genome 230 2.0 Array	1396024_PM_at	-	-
Rat Genome 230 2.0 Array	1373203_PM_at	-	-
Affymetrix HT Rat Focus Array	1396024_at	-	-
Affymetrix HT Rat Focus Array	1373203_at	-	-
Affymetrix HT Rat Focus Array	1396024_PM_at	-	-
Affymetrix HT Rat Focus Array	1373203_PM_at	-	-
Affymetrix Rat Clariom S Assay	PSR1700001718.rn.1	TC1700000208.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1700001719.rn.1	TC1700000208.rn.1	RTA TC
Rat Expression Set 230	1373203_PM_at	-	-
Rat Expression Set 230	1373203_at	-	-
Rat Expression Set 230	1396024_PM_at	-	-
Rat Expression Set 230	1396024_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10794206	-	-
Rat Genome U34 Set	rc_AA892380_at	-	-
Rat Genome U34 Set	rc_AI105284_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21585486	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1365055	-	-